PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN48834.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family TCP
Protein Properties Length: 374aa    MW: 41358 Da    PI: 8.079
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN48834.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP100.14e-31511802109
         TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.........eaesssssasnsssg... 88 
                  g+kdrhsk++T +g+RdRRvRls+++a+ ++dLqd+LG+ ++sk ++WLl++ak++i+el+ ++ ++ +++         +++s s ++s    g   
  KHN48834.1  51 FGGKDRHSKVCTIRGLRDRRVRLSVPTAIHLYDLQDRLGLNQPSKVVDWLLNAAKHEIDELPPLPIPPGNFTlgypslvscNEVSTSREGS----Gqnt 145
                 689*************************************************************888886666544333113333333333....1235 PP

         TCP  89 .......................kaaksaakskksqksaasaln 109
                                        +        + ++++++ ++n
  KHN48834.1 146 llwkpkpgeimvsdhdkanwmnrR--------EGDDDDDN-NHN 180
                 577777777777654322222210........22222222.122 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136930.54853111IPR017887Transcription factor TCP subgroup
PfamPF036341.4E-2853183IPR005333Transcription factor, TCP
Sequence ? help Back to Top
Protein Sequence    Length: 374 aa     Download sequence    Send to blast
MINSTKETDF PLKQEGLSSS DHEKAKAPSS SSSSQWLKLK DPRIVRVSRA FGGKDRHSKV  60
CTIRGLRDRR VRLSVPTAIH LYDLQDRLGL NQPSKVVDWL LNAAKHEIDE LPPLPIPPGN  120
FTLGYPSLVS CNEVSTSREG SGQNTLLWKP KPGEIMVSDH DKANWMNRRE GDDDDDNNHN  180
NSNGDKQGSN NNCHGGALVL PNNLLPTRPN HPSFLGLMNT MPSLGYQWEP NSSAADVNVQ  240
WQNHGFFNQT DVHSIDVVPF PSTLALSTGN STSTTTTSQI LVCPPPPGAT TQPYFPSSHF  300
ATMEMNARQI NHYQMLSSSS HQNLLANSLN HPSSQQLMSQ SGKAPFSLRI RPKLFHSPNS  360
SESHSQKDQD FPSK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150441e-146AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003554917.10.0PREDICTED: transcription factor TCP13-like
RefseqXP_006603910.10.0PREDICTED: transcription factor TCP13-like
RefseqXP_006603911.10.0PREDICTED: transcription factor TCP13-like
TrEMBLA0A0B2SWD70.0A0A0B2SWD7_GLYSO; Transcription factor TCP13
TrEMBLK7MW900.0K7MW90_SOYBN; Uncharacterized protein
STRINGGLYMA19G03786.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF93234119
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02150.11e-38plastid transcription factor 1
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]